Crystal Structure of the Catalytic Domain of Human Jmjd1C
Nowak, R., Goubin, S., Mcdonough, M., Fairhead, M., Oppermann, U., Johansson, C.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PROBABLE JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROT EIN 2C | 352 | Homo sapiens | Mutation(s): 0  Gene Names: JMJD1C, JHDM2C, KIAA1380, TRIP8 EC: 1.14.11 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15652 (Homo sapiens) Explore Q15652  Go to UniProtKB:  Q15652 | |||||
PHAROS:  Q15652 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15652 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PROBABLE JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROT EIN 2C | 352 | Homo sapiens | Mutation(s): 0  Gene Names: JMJD1C, JHDM2C, KIAA1380, TRIP8 EC: 1.14.11 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15652 (Homo sapiens) Explore Q15652  Go to UniProtKB:  Q15652 | |||||
PHAROS:  Q15652 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15652 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | G [auth B], H [auth B], I [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
MN Query on MN | C [auth A], E [auth B] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
CL Query on CL | D [auth A], F [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CSD Query on CSD | A | L-PEPTIDE LINKING | C3 H7 N O4 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
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a = 45.32 | α = 90 |
b = 110.92 | β = 90 |
c = 165.31 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
SCALA | data scaling |
DIMPLE | phasing |