5FW8 | pdb_00005fw8

Structure of human transthyretin mutant E89K

PDB DOI: https://doi.org/10.2210/pdb5FW8/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2016-02-12 Released: 2016-12-28
Deposition Author(s): Gallego, P., Varejao, N., Santanna, R., Saraiva, M.J., Ventura, S., Reverter, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free:
0.204 (Depositor), 0.217 (DCC)
R-Value Work:
0.169 (Depositor)
R-Value Observed:
0.171 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5FW8

This is version 1.1 of the entry. See complete history.

Literature

Structure of New Non-Amyloidogenic Mutant of Ttr A108V

Gallego, P., Varejao, N., Santanna, R., Saraiva, M.J., Ventura, S., Reverter, D.

To be published.

Macromolecule Content

Total Structure Weight: 27.55 kDa
Atom Count: 1,928
Modeled Residue Count: 232
Deposited Residue Count: 254
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TRANSTHYRETIN	A, B	127	Homo sapiens	Mutation(s): 1
UniProt & NIH Common Fund Data Resources
Find proteins for P02766 (Homo sapiens) Explore P02766 Go to UniProtKB: P02766
GTEx: ENSG00000118271
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02766
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.204 (Depositor), 0.217 (DCC)
R-Value Work: 0.169 (Depositor)
R-Value Observed: 0.171 (Depositor)

Space Group: P 2₁ 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.412	α = 90
b = 65.587	β = 90
c = 84.387	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-12-28

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-12-28
Type: Initial release
Version 1.1: 2024-05-08
Changes: Data collection, Database references, Derived calculations, Other

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.