5FQ2

Crystal structure of human SUMO E1 UFD domain in complex with Ubc9 in a P422 space group.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.229 
  • R-Value Observed: 0.230 

wwPDB Validation 3D Report Full Report



Literature

Crystal Structure of Human Sumo E1 Ufd Domain in Complex with Ubc9.

Liu, B.Castano, L.Lois, M.Reverter, D.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
SUMO-CONJUGATING ENZYME UBC9A161Homo sapiensMutation(s): 0 
Gene Names: UBE2IUBC9UBCE9
EC: 6.3.2 (PDB Primary Data), 2.3.2 (UniProt)
Find proteins for P63279 (Homo sapiens)
Explore P63279 
Go to UniProtKB:  P63279
NIH Common Fund Data Resources
PHAROS  P63279
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
SUMO-ACTIVATING ENZYME SUBUNIT 2B105Homo sapiensMutation(s): 0 
Gene Names: UBA2SAE2UBLE1BHRIHFB2115
EC: 6.3.2 (PDB Primary Data), 2.3.2 (UniProt)
Find proteins for Q9UBT2 (Homo sapiens)
Explore Q9UBT2 
Go to UniProtKB:  Q9UBT2
NIH Common Fund Data Resources
PHAROS  Q9UBT2
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
LDH
Query on LDH
AL-PEPTIDE LINKINGC8 H18 N2 O2LYS
MLZ
Query on MLZ
BL-PEPTIDE LINKINGC7 H16 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.229 
  • R-Value Observed: 0.230 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 129.614α = 90
b = 129.614β = 90
c = 66.578γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-11-16
    Type: Initial release