5FLE

High resolution NI,FE-CODH-320 mV with CN state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.23 Å
  • R-Value Free: 0.153 
  • R-Value Work: 0.121 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

When the inhibitor tells more than the substrate: the cyanide-bound state of a carbon monoxide dehydrogenase.

Ciaccafava, A.Tombolelli, D.Domnik, L.Fesseler, J.Jeoung, J.H.Dobbek, H.Mroginski, M.A.Zebger, I.Hildebrandt, P.

(2016) Chem Sci 7: 3162-3171


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CARBON MONOXIDE DEHYDROGENASE 2
X
636Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)Mutation(s): 0 
Gene Names: cooS2 (cooSII)
EC: 1.2.7.4
Find proteins for Q9F8A8 (Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901))
Go to UniProtKB:  Q9F8A8
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SF4
Query on SF4

Download SDF File 
Download CCD File 
X
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
 Ligand Interaction
FES
Query on FES

Download SDF File 
Download CCD File 
X
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
 Ligand Interaction
FE2
Query on FE2

Download SDF File 
Download CCD File 
X
FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
 Ligand Interaction
82N
Query on 82N

Download SDF File 
Download CCD File 
X
NICKEL IRON CLSUTER WITH CYANIDE BOUND
C Fe3 N Ni S4
FCGMBZZPUCDYKZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.23 Å
  • R-Value Free: 0.153 
  • R-Value Work: 0.121 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 112.216α = 90.00
b = 75.511β = 111.53
c = 71.132γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PHASERphasing
REFMACrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-09-14
    Type: Initial release
  • Version 1.1: 2018-08-29
    Type: Data collection, Database references, Derived calculations