5FJL

Crystal structure of raptor adenovirus 1 fibre head, wild-type form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.157 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of Raptor Adenovirus 1 Fibre Head and Role of the Beta-Hairpin in Siadenovirus Fibre Head Domains

Nguyen, T.H.Ballmann, M.Z.Do, H.T.Truong, H.N.Benko, M.Harrach, B.van Raaij, M.J.

(2016) Virol.J. 13: 106

  • DOI: 10.1186/s12985-016-0558-7
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Most adenoviruses recognize their host cells via an interaction of their fibre head domains with a primary receptor. The structural framework of adenovirus fibre heads is conserved between the different adenovirus genera for which crystal structures ...

    Most adenoviruses recognize their host cells via an interaction of their fibre head domains with a primary receptor. The structural framework of adenovirus fibre heads is conserved between the different adenovirus genera for which crystal structures have been determined (Mastadenovirus, Aviadenovirus, Atadenovirus and Siadenovirus), but genus-specific differences have also been observed. The only known siadenovirus fibre head structure, that of turkey adenovirus 3 (TAdV-3), revealed a twisted beta-sandwich resembling the reovirus fibre head architecture more than that of other adenovirus fibre heads, plus a unique beta-hairpin embracing a neighbouring monomer. The TAdV-3 fibre head was shown to bind sialyllactose.


    Related Citations: 
    • Complete Sequence of Raptor Adenovirus 1 Confirms the Characteristic Genome Organization of Siadenoviruses.
      Kovacs, E.R.,Benko, M.
      (2011) Infect.Genet.Evol 11: 1058


    Organizational Affiliation

    Departamento de Estructura de Macromoléculas, Centro Nacional de Biotecnología (CNB-CSIC), Calle Darwin 3, E-28049, Madrid, Spain.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
FIBER PROTEIN
A
174Raptor adenovirus 1Mutation(s): 0 
Find proteins for F4MI11 (Raptor adenovirus 1)
Go to UniProtKB:  F4MI11
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.157 
  • Space Group: P 21 3
Unit Cell:
Length (Å)Angle (°)
a = 81.720α = 90.00
b = 81.720β = 90.00
c = 81.720γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
Aimlessdata scaling
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-06-29
    Type: Initial release
  • Version 1.1: 2016-07-06
    Type: Database references
  • Version 1.2: 2017-12-13
    Type: Database references