Macromolecule Content

Total Structure Weight: 18.78 kDa
Atom Count: 1,227
Modelled Residue Count: 159
Deposited Residue Count: 172
Unique protein chains: 1

5FIN

DARPins as a new tool for experimental phasing in protein crystallography

PDB DOI: 10.2210/pdb5FIN/pdb

Classification: METAL BINDING PROTEIN
Organism(s): synthetic construct
Expression System: Escherichia coli K-12
Mutation(s): No

Deposited: 2015-09-30 Released: 2016-11-16
Deposition Author(s): Batyuk, A., Honegger, A., Andres, F., Briand, C., Gruetter, M., Plueckthun, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.34 Å
R-Value Free: 0.270
R-Value Work: 0.229
R-Value Observed: 0.231

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Darpins as a New Tool for Experimental Phasing in Protein Crystallography

Batyuk, A., Honegger, A., Andres, F., Briand, C., Gruetter, M., Plueckthun, A.

To be published.

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NI3C DARPIN MUTANT5 HG-SITE N1	A	172	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
HG Query on HG Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	MERCURY (II) ION Hg BQPIGGFYSBELGY-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.34 Å
R-Value Free: 0.270
R-Value Work: 0.229
R-Value Observed: 0.231
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.54	α = 90
b = 50.87	β = 90
c = 93	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2016-11-16

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-11-16
Type: Initial release
Version 1.1: 2017-07-05
Changes: Data collection

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.