5FG6

Crystal structure of the bromodomain of human BRD1 (BRPF2) in complex with OF-1 chemical probe


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.181 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the bromodomain of human BRD1 (BRPF2) in complex with OF-1 chemical probe

Tallant, C.Owen, D.R.Gerstenberger, B.S.Savitsky, P.Chaikuad, A.Fedorov, O.Nunez-Alonso, G.Filippakopoulos, P.von Delft, F.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Muller, S.Knapp, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bromodomain-containing protein 1
A
128Homo sapiensMutation(s): 0 
Gene Names: BRD1 (BRL, BRPF2)
Find proteins for O95696 (Homo sapiens)
Go to Gene View: BRD1
Go to UniProtKB:  O95696
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
5XE
Query on 5XE

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Download CCD File 
A
4-bromanyl-~{N}-(6-methoxy-1,3-dimethyl-2-oxidanylidene-benzimidazol-5-yl)-2-methyl-benzenesulfonamide
C17 H18 Br N3 O4 S
YUNQZQREIHWDQT-UHFFFAOYSA-N
 Ligand Interaction
NI
Query on NI

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Download CCD File 
A
NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.181 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 70.771α = 90.00
b = 84.328β = 90.00
c = 52.080γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2016-02-03
    Type: Initial release