5FFY

Crystal structure of the bromodomain of human BRPF1 in complex with a benzimidazole ligand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the bromodomain of human BRPF1 in complex with a benzimidazole ligand

Tallant, C.Savitsky, P.Nunez-Alonso, G.Kopec, J.Fedorov, O.Filippakopoulos, P.von Delft, F.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Knapp, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peregrin
A
116Homo sapiensMutation(s): 0 
Gene Names: BRPF1 (BR140)
Find proteins for P55201 (Homo sapiens)
Go to Gene View: BRPF1
Go to UniProtKB:  P55201
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
5XD
Query on 5XD

Download SDF File 
Download CCD File 
A
4-ethyl-~{N}-(6-methoxy-1,3-dimethyl-2-oxidanylidene-benzimidazol-5-yl)benzenesulfonamide
C18 H21 N3 O4 S
XTMAUXGMXOOESO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.183 
  • Space Group: I 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 48.545α = 90.00
b = 59.869β = 100.43
c = 51.236γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
REFMACphasing
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-12-30
    Type: Initial release