5FDA

The high resolution structure of apo form dihydrofolate reductase from Yersinia pestis at 1.55 A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.549 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.157 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

structure of dihydrofolate reductase from Yersinia pestis complex with

Chang, C.Maltseva, N.Kim, Y.Makowska-Grzyska, M.Mulligan, R.Papazisi, L.Anderson, W.F.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dihydrofolate reductase
A
163Yersinia pestisMutation(s): 0 
Gene Names: folA
EC: 1.5.1.3
Find proteins for A0A384KYY5 (Yersinia pestis)
Go to UniProtKB:  A0A384KYY5
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 60.265α = 90.00
b = 79.201β = 90.00
c = 64.321γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
HKL-3000data reduction
Cootmodel building
BUCCANEERmodel building
PHENIXrefinement
MOLREPphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-12-30
    Type: Initial release
  • Version 1.1: 2018-01-24
    Type: Database references, Derived calculations