5FBQ

PI4KB in complex with Rab11 and the MI358 Inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.789 Å
  • R-Value Free: 0.302 
  • R-Value Work: 0.248 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

PI4KB in complex with Rab11 and the MI358 Inhibitor

Chalupska, D.Mejdrova, I.Nencka, R.Boura, E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phosphatidylinositol 4-kinase beta,Phosphatidylinositol 4-kinase beta
A
572Homo sapiensMutation(s): 0 
Gene Names: PI4KB (PIK4CB)
EC: 2.7.1.67
Find proteins for Q9UBF8 (Homo sapiens)
Go to Gene View: PI4KB
Go to UniProtKB:  Q9UBF8
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ras-related protein Rab-11A
B
221Homo sapiensMutation(s): 0 
Gene Names: RAB11A (RAB11)
Find proteins for P62491 (Homo sapiens)
Go to Gene View: RAB11A
Go to UniProtKB:  P62491
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download SDF File 
Download CCD File 
B
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
5W6
Query on 5W6

Download SDF File 
Download CCD File 
A
~{N}-[2-[[6-chloranyl-3-[3-[4-(hydroxymethyl)piperidin-1-yl]sulfonyl-4-methoxy-phenyl]-2-methyl-imidazo[1,2-b]pyridazin-8-yl]amino]ethyl]ethanamide
C24 H31 Cl N6 O5 S
IEPPNMCWFCTFFK-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.789 Å
  • R-Value Free: 0.302 
  • R-Value Work: 0.248 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 48.759α = 90.00
b = 101.155β = 90.00
c = 188.486γ = 90.00
Software Package:
Software NamePurpose
XDSdata scaling
PHENIXrefinement
XDSdata reduction
PHASESphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-12-28
    Type: Initial release