Biological Assembly 1  

 3D View: Structure | 1D-3D View | Electron Density | Validation Report | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 28.95 kDa 
• Atom Count: 2204 
• Modelled Residue Count: 249 
• Deposited Residue Count: 249 
• Unique protein chains: 2

5F8X

The crystal structure of human plasma kallikrein in complex with its peptide inhibitor pkalin-3

• PDB DOI: 10.2210/pdb5F8X/pdb
• Entry: 5F8X supersedes: 4ZJ6

• Classification: HYDROLASE/HYDROLASE INHIBITOR
• Organism(s): Homo sapiens, synthetic construct
• Expression System: Komagataella pastoris
• Mutation(s): Yes 


• Deposited: 2015-12-09 Released: 2016-12-14 
• Deposition Author(s): Xu, M., Jiang, L., Xu, P., Luo, Z., Andreasen, P., Huang, M.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free: 0.243 
• R-Value Work: 0.221 
• R-Value Observed: 0.222 

Literature

The Crystal Structure Of Human Plasma Kallikrein In Complex With Its Peptide Inhibitor Pkalin-3

Xu, M., Jiang, L., Xu, P., Luo, Z., Andreasen, P., Huang, M.

To be published.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Plasma kallikrein	A	239	Homo sapiens	Mutation(s): 1  Gene Names: KLKB1, KLK3 EC: 3.4.21.34
UniProt & NIH Common Fund Data Resources
Find proteins for P03952 (Homo sapiens) Explore P03952  Go to UniProtKB:  P03952
PHAROS:  P03952 GTEx:  ENSG00000164344

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
CYS-PRO-ALA-ARG-PHE-M70-ALA-LEU-TRP-CYS	B	10	synthetic construct	Mutation(s): 0

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MRZ	K [auth B]	piperidine-1-carboximidamide C6 H13 N3 QUUYRYYUKNNNNS-UHFFFAOYSA-N
SO4	C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], I [auth A], J [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free: 0.243 
• R-Value Work: 0.221 
• R-Value Observed: 0.222 
• Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.339	α = 90
b = 90.339	β = 90
c = 57.346	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2015-12-09 
• Released Date: 2016-12-14 
Deposition Author(s): Xu, M., Jiang, L., Xu, P., Luo, Z., Andreasen, P., Huang, M.
• This entry supersedes: 4ZJ6

Revision History  

• Version 1.0: 2016-12-14
  Type: Initial release