Macromolecule Content

Total Structure Weight: 72.08 kDa
Atom Count: 4,432
Modelled Residue Count: 552
Deposited Residue Count: 626
Unique protein chains: 1

5F8U

Ligand occupancy in crystal structure of beta1-adrenergic receptor previously submitted by Huang et al

PDB DOI: 10.2210/pdb5F8U/pdb

Classification: SIGNALING PROTEIN
Organism(s): Meleagris gallopavo
Expression System: Trichoplusia ni
Mutation(s): Yes
Membrane Protein: Yes PDBTMMemProtMD

Deposited: 2015-12-09 Released: 2015-12-23
Deposition Author(s): Leslie, A.G.W., Warne, A., Tate, C.G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.35 Å
R-Value Free: 0.382
R-Value Work: 0.344
R-Value Observed: 0.346

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.3 of the entry. See complete history.

Re-refinement Note

This entry reflects an alternative modeling of the original data in: 4GPO

Literature

Ligand occupancy in crystal structure of Beta1 adrenergic G protein coupled receptor

Leslie, A.G.W., Warne, T., Tate, C.G.

(2015) Nat Struct Mol Biol 22: 941-942

PubMed: 26643842 Search on PubMedSearch on PubMed Central
DOI: 10.1038/nsmb.3130
Primary Citation of Related Structures:
5F8U

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-1 adrenergic receptor	B [auth A], A [auth B]	313	Meleagris gallopavo	Mutation(s): 8 Gene Names: ADRB1 Membrane Entity: Yes
UniProt
Find proteins for P07700 (Meleagris gallopavo) Explore P07700 Go to UniProtKB: P07700
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P07700
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
P32 Query on P32 Download Ideal Coordinates CCD File SDF format, chain C [auth B] SDF format, chain D [auth A] MOL2 format, chain C [auth B] MOL2 format, chain D [auth A]	C [auth B], D [auth A]	4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile C₁₆ H₂₁ N₃ O₂ CQEFAUFOQSCRMZ-LBPRGKRZSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.35 Å
R-Value Free: 0.382
R-Value Work: 0.344
R-Value Observed: 0.346
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 229.66	α = 90
b = 79.59	β = 101.83
c = 69.04	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2015-12-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-12-23
Type: Initial release
Version 1.1: 2018-03-07
Changes: Data collection
Version 1.2: 2018-12-26
Changes: Data collection, Experimental preparation
Version 1.3: 2019-04-03
Changes: Data collection, Source and taxonomy

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.