5F7H

Human T-cell immunoglobulin and mucin domain protein 4 (hTIM-4) complex with phosphoserine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.210 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structures of human TIM members: Ebolavirus entry-enhancing receptors

Wang, H.Qi, J.X.Liu, N.N.

(2015) Chin.Sci.Bull. 60: 3438-3453


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
T-cell immunoglobulin and mucin domain-containing protein 4
B, A, C, D, E, F
113Homo sapiensMutation(s): 0 
Gene Names: TIMD4 (TIM4)
Find proteins for Q96H15 (Homo sapiens)
Go to Gene View: TIMD4
Go to UniProtKB:  Q96H15
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SEP
Query on SEP

Download SDF File 
Download CCD File 
A, B, C, D, E, F
PHOSPHOSERINE
PHOSPHONOSERINE
C3 H8 N O6 P
BZQFBWGGLXLEPQ-REOHCLBHSA-N
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A, B, C, D, E, F
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.210 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 212.444α = 90.00
b = 65.034β = 108.55
c = 68.851γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
SCALEPACKdata scaling
HKL-2000data processing
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina81590761
Strategic Priority Research Program of the Chinese Academy of SciencesChinaXDB08020100

Revision History 

  • Version 1.0: 2016-02-03
    Type: Initial release