5F6C

The structure of E. coli RNase E catalytically inactive mutant with RNA bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.002 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.175 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Substrate Recognition and Autoinhibition in the Central Ribonuclease RNase E.

Bandyra, K.J.Wandzik, J.M.Luisi, B.F.

(2018) Mol. Cell 72: 275-285.e4


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ribonuclease E
A
512Escherichia coli (strain K12)Mutation(s): 2 
Gene Names: rne (ams, hmp1)
EC: 3.1.26.12
Find proteins for P21513 (Escherichia coli (strain K12))
Go to UniProtKB:  P21513
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ribonuclease E
B
513Escherichia coli (strain K12)Mutation(s): 2 
Gene Names: rne (ams, hmp1)
EC: 3.1.26.12
Find proteins for P21513 (Escherichia coli (strain K12))
Go to UniProtKB:  P21513
Entity ID: 3
MoleculeChainsLengthOrganism
RNA (5'-R(P*GP*U)-3')C2Escherichia coli
Entity ID: 4
MoleculeChainsLengthOrganism
RNA (5'-R(P*GP*UP*G)-3')E3Escherichia coli
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.002 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.175 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 91.619α = 90.00
b = 122.562β = 99.77
c = 122.195γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
PHENIXrefinement
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom076846/Z/05/A

Revision History 

  • Version 1.0: 2016-12-14
    Type: Initial release
  • Version 1.1: 2018-10-10
    Type: Data collection, Database references, Structure summary
  • Version 1.2: 2019-02-27
    Type: Data collection, Database references, Structure summary