5F49

Crystal structure of an aminoglycoside acetyltransferase HMB0020 from an uncultured soil metagenomic sample in complex with malonyl-coenzyme A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of an aminoglycoside acetyltransferase HMB0020 from an uncultured soil metagenomic sample

Xu, Z.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
aminoglycoside acetyltransferase HMB0020
A, B, C, D
157uncultured bacteriumMutation(s): 0 
Find proteins for A0A059WZ16 (uncultured bacterium)
Go to UniProtKB:  A0A059WZ16
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
COA
Query on COA

Download SDF File 
Download CCD File 
A
COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B, C, D
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
MLC
Query on MLC

Download SDF File 
Download CCD File 
B, C, D
MALONYL-COENZYME A
C24 H38 N7 O19 P3 S
LTYOQGRJFJAKNA-DVVLENMVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 46.159α = 72.30
b = 54.047β = 74.57
c = 84.847γ = 88.07
Software Package:
Software NamePurpose
HKL-3000data reduction
PHENIXphasing
PHENIXmodel building
Cootmodel building
PHENIXrefinement
HKL-3000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-12-16
    Type: Initial release
  • Version 1.1: 2016-02-24
    Type: Structure summary