5F12

WrbA in complex with FMN under crystallization conditions of WrbA-FMN-BQ structure (4YQE)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.178 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Quantum Calculations Indicate Effective Electron Transfer between FMN and Benzoquinone in a New Crystal Structure of Escherichia coli WrbA.

Degtjarik, O.Brynda, J.Ettrichova, O.Kuty, M.Sinha, D.Kuta Smatanova, I.Carey, J.Ettrich, R.Reha, D.

(2016) J.Phys.Chem.B 120: 4867-4877


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H dehydrogenase (quinone)
A, B
197Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: wrbA
EC: 1.6.5.2
Find proteins for P0A8G6 (Escherichia coli (strain K12))
Go to UniProtKB:  P0A8G6
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMN
Query on FMN

Download SDF File 
Download CCD File 
A, B
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MHO
Query on MHO
A, B
L-PEPTIDE LINKINGC5 H11 N O3 SMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.178 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 60.750α = 90.00
b = 60.750β = 90.00
c = 169.020γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
XDSdata reduction
Cootmodel building
REFMACrefinement
BALBESphasing
PDB_EXTRACTdata extraction
MxCuBEdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-05-25
    Type: Initial release
  • Version 1.1: 2016-06-01
    Type: Database references
  • Version 1.2: 2016-06-08
    Type: Database references
  • Version 1.3: 2016-06-22
    Type: Database references