5EZ5

Crystal structure of active Rab11A (S20V) in complex with GTP

• PDB DOI: https://doi.org/10.2210/pdb5EZ5/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2015-11-26 Released: 2016-12-07 
• Deposition Author(s): Shin, Y.-C., Yoon, J.H., Park, H.H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.304 
• R-Value Work: 0.237 
• R-Value Observed: 0.240 

Literature

Crystal structure of active Rab11A (S20V) in complex with GTP

Shin, Y.-C., Yoon, J.H., Park, H.H.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 39.08 kDa 
• Atom Count: 2,696 
• Modelled Residue Count: 336 
• Deposited Residue Count: 336 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ras-related protein Rab-11A	A, B	168	Homo sapiens	Mutation(s): 1  Gene Names: RAB11A, RAB11 EC: 3.6.5.2
UniProt & NIH Common Fund Data Resources
Find proteins for P62491 (Homo sapiens) Explore P62491  Go to UniProtKB:  P62491
PHAROS:  P62491 GTEx:  ENSG00000103769

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GTP	D [auth A], F [auth B]	GUANOSINE-5'-TRIPHOSPHATE C10 H16 N5 O14 P3 XKMLYUALXHKNFT-UUOKFMHZSA-N
MG	C [auth A], E [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.304 
• R-Value Work: 0.237 
• R-Value Observed: 0.240 
• Space Group: I 4

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 74.111	α = 90
b = 74.111	β = 90
c = 149.444	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-12-07 
Deposition Author(s): Shin, Y.-C., Yoon, J.H., Park, H.H.

Revision History  

• Version 1.0: 2016-12-07
  Type: Initial release
  
• Version 1.1: 2024-03-20
  Changes: Data collection, Database references, Derived calculations