5EZ2

Sandercyanin Fluorescent Protein (SFP)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.849 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Blue protein with red fluorescence

Ghosh, S.Yu, C.L.Ferraro, D.J.Sudha, S.Pal, S.K.Schaefer, W.F.Gibson, D.T.Ramaswamy, S.

(2016) Proc.Natl.Acad.Sci.USA 113: 11513-11518

  • DOI: 10.1073/pnas.1525622113
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The walleye (Sander vitreus) is a golden yellow fish that inhabits the Northern American lakes. The recent sightings of the blue walleye and the correlation of its sighting to possible increased UV radiation have been proposed earlier. The underlying ...

    The walleye (Sander vitreus) is a golden yellow fish that inhabits the Northern American lakes. The recent sightings of the blue walleye and the correlation of its sighting to possible increased UV radiation have been proposed earlier. The underlying molecular basis of its adaptation to increased UV radiation is the presence of a protein (Sandercyanin)-ligand complex in the mucus of walleyes. Degradation of heme by UV radiation results in the formation of Biliverdin IXα (BLA), the chromophore bound to Sandercyanin. We show that Sandercyanin is a monomeric protein that forms stable homotetramers on addition of BLA to the protein. A structure of the Sandercyanin-BLA complex, purified from the fish mucus, reveals a glycosylated protein with a lipocalin fold. This protein-ligand complex absorbs light in the UV region (λ max of 375 nm) and upon excitation at this wavelength emits in the red region (λ max of 675 nm). Unlike all other known biliverdin-bound fluorescent proteins, the chromophore is noncovalently bound to the protein. We provide here a molecular rationale for the observed spectral properties of Sandercyanin.


    Organizational Affiliation

    Department of Microbiology, University of Iowa, Iowa City, IA 52242.,Department of Biochemistry, University of Iowa, Iowa City, IA 52242.,Department of Biochemistry, University of Iowa, Iowa City, IA 52242; Institute for Stem Cell Biology and Regenerative Medicine, Bangalore, India 560065; ramas@instem.res.in.,Department of Chemical, Biological & Macromolecular Sciences, S.N. Bose National Centre for Basic Sciences, Salt Lake, Kolkata 700 098, India.,Department of Biological Sciences, University of Wisconsin, Washington County, WI 53095.,Institute for Stem Cell Biology and Regenerative Medicine, Bangalore, India 560065.,National Center for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India 560065.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Sandercyanin Fluorescent Protein
A, B
183Sander vitreusMutation(s): 0 
Find proteins for A0A1D5B367 (Sander vitreus)
Go to UniProtKB:  A0A1D5B367
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
BLA
Query on BLA

Download SDF File 
Download CCD File 
A, B
BILIVERDINE IX ALPHA
C33 H34 N4 O6
GWZYPXHJIZCRAJ-SRVCBVSDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.849 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.190 
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 159.266α = 90.00
b = 159.266β = 90.00
c = 84.157γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
iMOSFLMdata reduction
HKL-2000data processing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-09-28
    Type: Initial release
  • Version 1.1: 2016-10-26
    Type: Database references