5EWN

Crystal structure of the human astrovirus 1 capsid protein core domain at 2.6 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.602 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural, Mechanistic, and Antigenic Characterization of the Human Astrovirus Capsid.

York, R.L.Yousefi, P.A.Bogdanoff, W.Haile, S.Tripathi, S.DuBois, R.M.

(2015) J.Virol. 90: 2254-2263


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Structural protein
A, B
375Human astrovirus-1Mutation(s): 0 
Gene Names: S
Find proteins for Q82452 (Human astrovirus-1)
Go to UniProtKB:  Q82452
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.602 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.192 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 66.243α = 90.00
b = 71.098β = 90.00
c = 158.911γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
Cootmodel building
PHENIXrefinement
HKL-2000data reduction
SOLVEphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI095369

Revision History 

  • Version 1.0: 2015-12-23
    Type: Initial release
  • Version 1.1: 2016-02-24
    Type: Database references
  • Version 1.2: 2017-09-20
    Type: Advisory, Author supporting evidence, Database references, Derived calculations