5EU9

Structure of Human Enolase 2 in complex with ((3S,5S)-1,5-dihydroxy-3-methyl-2-oxopyrrolidin-3-yl)phosphonic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.047 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

SF2312, a natural phosphonate inhibitor of Enolase

Leonard, P.G.Maxwell, D.Satani, N.Peng, Z.Link, T.Lee, G.Bosajou, A.Sun, D.Lin, Y.E.DiFrancesco, M.E.Czako, B.Wang, Y.A.Bornmann, W.DePhinho, R.A.Muller, F.L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Gamma-enolase
A, B, C, D, E, F, G, H
440Homo sapiensMutation(s): 0 
Gene Names: ENO2
EC: 4.2.1.11
Find proteins for P09104 (Homo sapiens)
Go to Gene View: ENO2
Go to UniProtKB:  P09104
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
PGE
Query on PGE

Download SDF File 
Download CCD File 
C, D, E, F, G, H
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
5TX
Query on 5TX

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
((3S,5S)-1,5-dihydroxy-3-methyl-2-oxopyrrolidin-3-yl)phosphonic acid
C5 H10 N O6 P
VVBLYPMICKYZTP-UCORVYFPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.047 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.154 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 119.251α = 90.00
b = 110.310β = 90.00
c = 136.930γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
iMOSFLMdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Cancer Prevention and Research Institute of TexasUnited StatesRP140612
American Cancer SocietyUnited States365082

Revision History 

  • Version 1.0: 2016-11-23
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Refinement description
  • Version 1.2: 2019-04-24
    Type: Author supporting evidence, Data collection