5ES1

CRYSTAL STRUCTURE OF MICROTUBULE AFFINITY-REGULATING KINASE 4 CATALYTIC DOMAIN IN COMPLEX WITH A PYRAZOLOPYRIMIDINE INHIBITOR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.311 
  • R-Value Work: 0.239 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of microtubule affinity-regulating kinase 4 catalytic domain in complex with a pyrazolopyrimidine inhibitor.

Sack, J.S.Gao, M.Kiefer, S.E.Myers, J.E.Newitt, J.A.Wu, S.Yan, C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 129-134


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MAP/microtubule affinity-regulating kinase 4
A
328Homo sapiensMutation(s): 0 
Gene Names: MARK4 (KIAA1860, MARKL1)
EC: 2.7.11.1
Find proteins for Q96L34 (Homo sapiens)
Go to Gene View: MARK4
Go to UniProtKB:  Q96L34
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
5RC
Query on 5RC

Download SDF File 
Download CCD File 
A
~{N}-[(1~{R},6~{R})-6-azanyl-2,2-bis(fluoranyl)cyclohexyl]-5-ethyl-4-[6-(trifluoromethyl)pyrazolo[1,5-a]pyrimidin-3-yl]thiophene-2-carboxamide
C20 H20 F5 N5 O S
QXXZIVGTJXYLQO-CZUORRHYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.311 
  • R-Value Work: 0.239 
  • Space Group: P 62
Unit Cell:
Length (Å)Angle (°)
a = 111.478α = 90.00
b = 111.478β = 90.00
c = 69.775γ = 120.00
Software Package:
Software NamePurpose
DENZOdata reduction
PDB_EXTRACTdata extraction
BUSTER-TNTrefinement
PHASERphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2015-11-16 
  • Released Date: 2015-12-02 
  • Deposition Author(s): Sack, J.S.

Revision History 

  • Version 1.0: 2015-12-02
    Type: Initial release
  • Version 1.1: 2016-02-10
    Type: Database references
  • Version 1.2: 2017-11-22
    Type: Derived calculations, Refinement description
  • Version 1.3: 2018-04-18
    Type: Data collection, Database references