5ENC

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with N-(2,6-Dichlorobenzyl)acetamide (SGC - Diamond I04-1 fragment screening)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

A Poised Fragment Library Enables Rapid Synthetic Expansion Yielding the First Reported Inhibitors of PHIP(2), an Atypical Bromodomain

Krojer, T.Talon, R.Collins, P.Bradley, A.Cox, O.Szykowska, A.Burgess-Brown, N.Brennan, P.Bountra, C.Arrowsmith, C.H.Edwards, A.von Delft, F.Structural Genomics Consortium (SGC)

(2016) Chem Sci 7: 2322-2330


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PH-interacting protein
A
131Homo sapiensGene Names: PHIP (WDR11)
Find proteins for Q8WWQ0 (Homo sapiens)
Go to Gene View: PHIP
Go to UniProtKB:  Q8WWQ0
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
5QD
Query on 5QD

Download SDF File 
Download CCD File 
A
~{N}-[[2,6-bis(chloranyl)phenyl]methyl]ethanamide
C9 H9 Cl2 N O
MDSIORNLJCVXLC-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.203 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 60.687α = 90.00
b = 91.582β = 90.00
c = 24.033γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-04-27
    Type: Initial release