Download Mendeley
Download EndnoteStructural characterization and practical fluorescence applications of the F45W ubiquitin mutant
Nakasone, M.A., Geng, C., Chojnacki, M., Glickman, M., Paukstelis, P.J., Fushman, D.To be published.
5EMZ
Crystal structure of K48-linked diubiquitin with F45W mutation in the proximal unit
- DOI: 10.2210/pdb5EMZ/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): 1
- Deposited: 2015-11-07 Released: 2016-11-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.66 Å
- R-Value Free: 0.209
- R-Value Work: 0.171
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Polyubiquitin-B | A, C, E | 76 | Homo sapiens | Mutation(s): 0 Gene Names: UBB |
Find proteins for P0CG47 (Homo sapiens) Go to Gene View: UBB Go to UniProtKB: P0CG47 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Polyubiquitin-B | B, D, F | 76 | Homo sapiens | Mutation(s): 1 Gene Names: UBB |
Find proteins for P0CG47 (Homo sapiens) Go to Gene View: UBB Go to UniProtKB: P0CG47 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B, D, E | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.66 Å
- R-Value Free: 0.209
- R-Value Work: 0.171
- Space Group: C 1 2 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 58.870 | α = 90.00 |
| b = 78.920 | β = 97.93 |
| c = 91.510 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| PHASER | phasing |
| iMOSFLM | data reduction |
| PHENIX | refinement |
Entry History
Deposition Data
- Deposited Date: 2015-11-07
- Released Date: 2016-11-16
- Deposition Author(s): Nakasone, M.A., Paukstelis, P.J., Fushman, D.
