Download MendeleyStructural characterization and practical fluorescence applications of the F45W ubiquitin mutant
Nakasone, M.A., Geng, C., Chojnacki, M., Glickman, M., Paukstelis, P.J., Fushman, D.To be published.
5EMZ
Crystal structure of K48-linked diubiquitin with F45W mutation in the proximal unit
- PDB DOI: 10.2210/pdb5EMZ/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2015-11-07 Released: 2016-11-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.66 Å
- R-Value Free: 0.209
- R-Value Work: 0.171
- R-Value Observed: 0.173
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Polyubiquitin-B | A, C, E | 76 | Homo sapiens | Mutation(s): 0 Gene Names: UBB |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0CG47 (Homo sapiens) Explore P0CG47 Go to UniProtKB: P0CG47 | |||||
PHAROS: P0CG47 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0CG47 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Polyubiquitin-B | B, D, F | 76 | Homo sapiens | Mutation(s): 1 Gene Names: UBB |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0CG47 (Homo sapiens) Explore P0CG47 Go to UniProtKB: P0CG47 | |||||
PHAROS: P0CG47 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0CG47 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | G [auth B], H [auth D], I [auth E], J [auth E] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.66 Å
- R-Value Free: 0.209
- R-Value Work: 0.171
- R-Value Observed: 0.173
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.87 | α = 90 |
| b = 78.92 | β = 97.93 |
| c = 91.51 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| PHASER | phasing |
| iMOSFLM | data reduction |
Entry History
Deposition Data
- Deposited Date: 2015-11-07
- Released Date: 2016-11-16 Deposition Author(s): Nakasone, M.A., Paukstelis, P.J., Fushman, D.
Revision History (Full details and data files)
- Version 1.0: 2016-11-16
Type: Initial release
