5EJV

RORy in complex with T090131718 and Coactivator peptide EBI96


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.58 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.179 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Discovery of biaryls as ROR gamma inverse agonists by using structure-based design.

Enyedy, I.J.Powell, N.A.Caravella, J.van Vloten, K.Chao, J.Banerjee, D.Marcotte, D.Silvian, L.McKenzie, A.Hong, V.S.Fontenot, J.D.

(2016) Bioorg.Med.Chem.Lett. 26: 2459-2463

  • DOI: 10.1016/j.bmcl.2016.03.109
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • RORγ plays a critical role in controlling a pro-inflammatory gene expression program in several lymphocyte lineages including T cells, γδ T cells, and innate lymphoid cells. RORγ-mediated inflammation has been linked to susceptibility to Crohn's dise ...

    RORγ plays a critical role in controlling a pro-inflammatory gene expression program in several lymphocyte lineages including T cells, γδ T cells, and innate lymphoid cells. RORγ-mediated inflammation has been linked to susceptibility to Crohn's disease, arthritis, and psoriasis. Thus inverse agonists of RORγ have the potential of modulating inflammation. Our goal was to optimize two RORγ inverse agonists: T0901317 from literature and 1 that we obtained from internal screening. We used information from internal X-ray structures to design two libraries that led to a new biaryl series.


    Organizational Affiliation

    Biogen, 250 Binney St., Cambridge, MA 02142, USA. Electronic address: istvan.enyedy@biogen.com.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nuclear receptor ROR-gamma
A, B
262Homo sapiensMutation(s): 0 
Gene Names: RORC (NR1F3, RORG, RZRG)
Find proteins for P51449 (Homo sapiens)
Go to Gene View: RORC
Go to UniProtKB:  P51449
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
EBI96 Coactivator Peptide
C, D
19N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
444
Query on 444

Download SDF File 
Download CCD File 
A, B
N-(2,2,2-TRIFLUOROETHYL)-N-{4-[2,2,2-TRIFLUORO-1-HYDROXY-1-(TRIFLUOROMETHYL)ETHYL]PHENYL}BENZENESULFONAMIDE
C17 H12 F9 N O3 S
SGIWFELWJPNFDH-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
444IC50: 60 - 6500 nM (100) BINDINGDB
444EC50: 54 - 463 nM (100) BINDINGDB
444Ki: 51 nM (100) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.58 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.179 
  • Space Group: P 41
Unit Cell:
Length (Å)Angle (°)
a = 63.139α = 90.00
b = 63.139β = 90.00
c = 160.441γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
MOLREPphasing
PDB_EXTRACTdata extraction
SCALAdata scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2015-11-02 
  • Released Date: 2016-04-27 
  • Deposition Author(s): Marcotte, D.M.

Revision History 

  • Version 1.0: 2016-04-27
    Type: Initial release
  • Version 1.1: 2016-06-29
    Type: Database references