5EHD

Crystal structure of human nucleophosmin-core in complex with cytochrome c


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of human nucleophosmin-core in complex with cytochrome c

Bernardo-Garcia, N.Hermoso, J.A.Gonzalez-Arzola, K.Diaz-Moreno, I.De la Rosa, M.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nucleophosmin
A, B, C, D, E, F, G, H, I, J, a, b, c, d, e, f, g, h, i, j
116Homo sapiensMutation(s): 0 
Gene Names: NPM1 (NPM)
Find proteins for P06748 (Homo sapiens)
Go to Gene View: NPM1
Go to UniProtKB:  P06748
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, b, f, G
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.164 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 58.799α = 90.00
b = 179.720β = 94.32
c = 104.300γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
Cootmodel building
PHENIXrefinement
iMOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-11-09
    Type: Initial release