5EGN | pdb_00005egn

Est816 as an N-Acyl homoserine lactone degrading enzyme

  • Classification: HYDROLASE
  • Organism(s): uncultured bacterium
  • Expression System: Escherichia coli BL21(DE3)
  • Mutation(s): Yes 

  • Deposited: 2015-10-27 Released: 2016-11-02 
  • Deposition Author(s): Xie, W., Liu, X., Cao, L., Liu, Y.
  • Funding Organization(s): Guangdong Innovative Research Team Program, The Fundamental Research Funds for the Central Universities, National Sciences Foundation of China, Science and Technology Program of Guangzhou

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.64 Å
  • R-Value Free: 
    0.264 (Depositor), 0.260 (DCC) 
  • R-Value Work: 
    0.219 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 
    0.222 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Est816 as an N-Acyl homoserine lactone degrading enzyme

Xie, W., Liu, X., Cao, L., Liu, Y.

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Esterase
A, B, C, D, E
A, B, C, D, E, F, G, H
271uncultured bacteriumMutation(s): 2 
Gene Names: est816
EC: 3.1.1.1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.64 Å
  • R-Value Free:  0.264 (Depositor), 0.260 (DCC) 
  • R-Value Work:  0.219 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 0.222 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 109.806α = 90
b = 78.545β = 99.37
c = 116.472γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
BALBESphasing

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Guangdong Innovative Research Team ProgramChina2011Y038
The Fundamental Research Funds for the Central UniversitiesChina15lgjc02
National Sciences Foundation of ChinaChina31100579
Science and Technology Program of GuangzhouChina201504010025

Revision History  (Full details and data files)

  • Version 1.0: 2016-11-02
    Type: Initial release
  • Version 1.1: 2023-11-08
    Changes: Data collection, Database references, Derived calculations, Refinement description