5EGK

The structural and biochemical characterization of acyl-coa hydrolase mutant Asp43Ala from Staphylococcus aureus

• PDB DOI: https://doi.org/10.2210/pdb5EGK/pdb

• Classification: HYDROLASE
• Organism(s): Staphylococcus aureus subsp. aureus Mu50
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2015-10-27 Released: 2015-11-11 
• Deposition Author(s): Khandokar, Y.B., Srivastava, P.S., Forwood, J.K.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.238 
• R-Value Work: 0.206 
• R-Value Observed: 0.208 

Literature

The structural and biochemical characterization of acyl-coa hydrolase from Staphylococcus aureus

Khandokar, Y.B., Srivastava, P.S., Forwood, J.K.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 121.33 kDa 
• Atom Count: 7,831 
• Modelled Residue Count: 991 
• Deposited Residue Count: 1,074 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl CoA Hydrolase	A, B, C, D, E, F	179	Staphylococcus aureus subsp. aureus Mu50	Mutation(s): 1  Gene Names: SAV1878
UniProt
Find proteins for A0A0H3K033 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore A0A0H3K033  Go to UniProtKB:  A0A0H3K033

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.238 
• R-Value Work: 0.206 
• R-Value Observed: 0.208 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.71	α = 90
b = 129	β = 104.1
c = 83.56	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
iMOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-11-11 
Deposition Author(s): Khandokar, Y.B., Srivastava, P.S., Forwood, J.K.

Revision History  

• Version 1.0: 2015-11-11
  Type: Initial release
  
• Version 1.1: 2015-11-25
  Changes: Structure summary
• Version 1.2: 2023-09-27
  Changes: Data collection, Database references, Derived calculations, Refinement description