5ECY

Structure of the Shigella flexneri VapC mutant D98N crystal form 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.180 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural analysis on the active site architecture of an activated VapC toxin from Shigella flexneri

Xu, K.Dedic, E.Brodersen, D.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
tRNA(fMet)-specific endonuclease VapC
A, B, C, D, E, F, G, H
138Shigella flexneriMutation(s): 1 
Gene Names: vapC (mvpA, stborf2)
EC: 3.1.-.-
Find proteins for O06662 (Shigella flexneri)
Go to UniProtKB:  O06662
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.180 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 139.440α = 90.00
b = 139.440β = 90.00
c = 130.660γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chinese Scholarship CouncilChina--

Revision History 

  • Version 1.0: 2016-10-19
    Type: Initial release
  • Version 1.1: 2018-01-17
    Type: Data collection