5ECM

Crystal Structure of FIN219-FIP1 complex with JA and Leu


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.232 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural basis of jasmonate-amido synthetase FIN219 in complex with glutathione S-transferase FIP1 during the JA signal regulation

Chen, C.Y.Ho, S.S.Kuo, T.Y.Hsieh, H.L.Cheng, Y.S.

(2017) Proc. Natl. Acad. Sci. U.S.A. 114: E1815-E1824

  • DOI: 10.1073/pnas.1609980114
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Far-red (FR) light-coupled jasmonate (JA) signaling is necessary for plant defense and development. FR insensitive 219 (FIN219) is a member of the Gretchen Hagen 3 (GH3) family of proteins in <i>Arabidopsis </i> and belongs to the adenylate-forming ...

    Far-red (FR) light-coupled jasmonate (JA) signaling is necessary for plant defense and development. FR insensitive 219 (FIN219) is a member of the Gretchen Hagen 3 (GH3) family of proteins in Arabidopsis and belongs to the adenylate-forming family of enzymes. It directly controls biosynthesis of jasmonoyl-isoleucine in JA-mediated defense responses and interacts with FIN219-interacting protein 1 (FIP1) under FR light conditions. FIN219 and FIP1 are involved in FR light signaling and are regulators of the interplay between light and JA signaling. However, how their interactions affect plant physiological functions remains unclear. Here, we demonstrate the crystal structures of FIN219-FIP1 while binding with substrates at atomic resolution. Our results show an unexpected FIN219 conformation and demonstrate various differences between this protein and other members of the GH3 family. We show that the rotated C-terminal domain of FIN219 alters ATP binding and the core structure of the active site. We further demonstrate that this unique FIN219-FIP1 structure is crucial for increasing FIN219 activity and determines the priority of substrate binding. We suggest that the increased FIN219 activity resulting from the complex form, a conformation for domain switching, allows FIN219 to switch to its high-affinity mode and thereby enhances JA signaling under continuous FR light conditions.


    Related Citations: 
    • Structural basis for prereceptor modulation of plant hormones by GH3 proteins.
      Westfall, C.S.,Zubieta, C.,Herrmann, J.,Kapp, U.,Nanao, M.H.,Jez, J.M.
      (2012) Science 336: 1708


    Organizational Affiliation

    Institute of Plant Biology, National Taiwan University, Taipei 10617, Taiwan; chengys@ntu.edu.tw.,Genome and Systems Biology Degree Program, National Taiwan University, Taipei 10617, Taiwan.,Institute of Plant Biology, National Taiwan University, Taipei 10617, Taiwan.,Department of Life Science, National Taiwan University, Taipei 10617, Taiwan.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Jasmonic acid-amido synthetase JAR1
A, D
575Arabidopsis thalianaMutation(s): 0 
Gene Names: JAR1 (FIN219)
EC: 6.3.2.52
Find proteins for Q9SKE2 (Arabidopsis thaliana)
Go to UniProtKB:  Q9SKE2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Glutathione S-transferase U20
B, C, E, F
223Arabidopsis thalianaMutation(s): 0 
Gene Names: GSTU20 (FIP1)
EC: 2.5.1.18
Find proteins for Q8L7C9 (Arabidopsis thaliana)
Go to UniProtKB:  Q8L7C9
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
LEU
Query on LEU

Download SDF File 
Download CCD File 
A, D
LEUCINE
C6 H13 N O2
ROHFNLRQFUQHCH-YFKPBYRVSA-N
 Ligand Interaction
GSH
Query on GSH

Download SDF File 
Download CCD File 
B, C, E, F
GLUTATHIONE
C10 H17 N3 O6 S
RWSXRVCMGQZWBV-WDSKDSINSA-N
 Ligand Interaction
JAA
Query on JAA

Download SDF File 
Download CCD File 
A, D
{(1R,2R)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl}acetic acid
C12 H18 O3
ZNJFBWYDHIGLCU-HWKXXFMVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.232 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 53.822α = 97.15
b = 53.901β = 92.27
c = 195.815γ = 113.64
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
Cootmodel building
DENZOdata reduction
PHENIXmodel building
PHENIXrefinement
SCALEPACKdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-11-02
    Type: Initial release
  • Version 1.1: 2017-03-08
    Type: Database references
  • Version 1.2: 2017-03-22
    Type: Database references