5E6I

Crystal structure of TCR PF8 in complex with flu MP(58-66) epitope presented by HLA-A2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.00 Å
  • R-Value Free: 0.338 
  • R-Value Work: 0.259 
  • R-Value Observed: 0.263 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Crystal structure of TCR PF8 in complex with flu MP(58-66) epitope presented by HLA-A2

Gao, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
TCR alpha chain,Human nkt tcr alpha chainAFGP208Homo sapiensMutation(s): 0 
Gene Names: B2M
Find proteins for K7N5M3 (Homo sapiens)
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Go to UniProtKB:  K7N5M3
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
T-cell receptor beta-2 chain C regionBHLQ243Homo sapiensMutation(s): 0 
Gene Names: TRBC2
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
HLA class I histocompatibility antigen, A-2 alpha chainCIMR276Homo sapiensMutation(s): 0 
Gene Names: HLA-AHLAA
Find proteins for P04439 (Homo sapiens)
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NIH Common Fund Data Resources
PHAROS  P04439
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Beta-2-microglobulinDJNU100Homo sapiensMutation(s): 0 
Gene Names: B2MCDABP0092HDCMA22P
Find proteins for P61769 (Homo sapiens)
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PHAROS  P61769
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Matrix protein 1EKOT9Influenza A virus (A/Boston/2747243M/2009(H1N1))Mutation(s): 0 
Find proteins for P03485 (Influenza A virus (strain A/Puerto Rico/8/1934 H1N1))
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.00 Å
  • R-Value Free: 0.338 
  • R-Value Work: 0.259 
  • R-Value Observed: 0.263 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 71.853α = 83.66
b = 123.614β = 74.87
c = 139.036γ = 73.17
Software Package:
Software NamePurpose
PHENIXrefinement
d*TREKdata scaling
PHASERphasing
Cootmodel building
PDB_EXTRACTdata extraction
CrystalCleardata reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2015-10-09 
  • Released Date: 2016-10-19 
  • Deposition Author(s): Gao, M., Mariuzza, R.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI036900

Revision History 

  • Version 1.0: 2016-10-19
    Type: Initial release
  • Version 1.1: 2017-09-06
    Changes: Author supporting evidence, Derived calculations
  • Version 1.2: 2017-11-01
    Changes: Author supporting evidence
  • Version 1.3: 2019-12-11
    Changes: Author supporting evidence
  • Version 1.4: 2020-01-29
    Changes: Derived calculations