5E6I

Crystal structure of TCR PF8 in complex with flu MP(58-66) epitope presented by HLA-A2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.00 Å
  • R-Value Free: 0.338 
  • R-Value Work: 0.259 
  • R-Value Observed: 0.263 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Crystal structure of TCR PF8 in complex with flu MP(58-66) epitope presented by HLA-A2

Gao, M.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
TCR alpha chain,Human nkt tcr alpha chainF [auth A],
K [auth F],
A [auth G],
P
208Homo sapiensMutation(s): 0 
Gene Names: B2MHDCMA22P
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UniProt GroupK7N5M3
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
T-cell receptor beta-2 chain C regionG [auth B],
B [auth H],
L,
Q
243Homo sapiensMutation(s): 0 
Gene Names: TRBC2
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
HLA class I histocompatibility antigen, A-2 alpha chainH [auth C],
C [auth I],
M,
R
276Homo sapiensMutation(s): 0 
Gene Names: HLA-AHLAA
UniProt & NIH Common Fund Data Resources
Find proteins for P04439 (Homo sapiens)
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PHAROS:  P04439
GTEx:  ENSG00000206503 
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UniProt GroupP04439
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Beta-2-microglobulinI [auth D],
D [auth J],
N,
S [auth U]
100Homo sapiensMutation(s): 0 
Gene Names: B2MCDABP0092HDCMA22P
UniProt & NIH Common Fund Data Resources
Find proteins for P61769 (Homo sapiens)
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PHAROS:  P61769
GTEx:  ENSG00000166710 
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Matrix protein 1J [auth E],
E [auth K],
O,
T
9Influenza A virus (A/Boston/2747243M/2009(H1N1))Mutation(s): 0 
UniProt
Find proteins for P03485 (Influenza A virus (strain A/Puerto Rico/8/1934 H1N1))
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UniProt GroupP03485
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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.00 Å
  • R-Value Free: 0.338 
  • R-Value Work: 0.259 
  • R-Value Observed: 0.263 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 71.853α = 83.66
b = 123.614β = 74.87
c = 139.036γ = 73.17
Software Package:
Software NamePurpose
PHENIXrefinement
d*TREKdata scaling
PHASERphasing
Cootmodel building
PDB_EXTRACTdata extraction
CrystalCleardata reduction

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data

  • Deposited Date: 2015-10-09 
  • Released Date: 2016-10-19 
  • Deposition Author(s): Gao, M., Mariuzza, R.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI036900

Revision History  (Full details and data files)

  • Version 1.0: 2016-10-19
    Type: Initial release
  • Version 1.1: 2017-09-06
    Changes: Author supporting evidence, Derived calculations
  • Version 1.2: 2017-11-01
    Changes: Author supporting evidence
  • Version 1.3: 2019-12-11
    Changes: Author supporting evidence
  • Version 1.4: 2020-01-29
    Changes: Derived calculations