5E5I

Structure of the ornithine aminotransferase from Toxoplasma gondii in complex with inactivator


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.168 
  • R-Value Observed: 0.171 

wwPDB Validation   3D Report Full Report



Literature

Structure of the ornithine aminotransferase from Toxoplasma gondii in complex with inactivator.

Filippova, E.V.Minasov, G.Flores, K.Le, H.V.Silverman, R.B.McLeod, R.L.Anderson, W.F.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Ornithine aminotransferase, mitochondrialAB441Toxoplasma gondiiMutation(s): 0 
Gene Names: TGME49_269110
EC: 2.6.1.13
Find proteins for S8EY38 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore S8EY38 
Go to UniProtKB:  S8EY38
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
5NJ
Query on 5NJ

Download CCD File 
A
6-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-4-oxidanylidene-hexanoic acid
C13 H18 N O8 P
QNTFLQLZXLXUGE-UHFFFAOYSA-N
 Ligand Interaction
5JV
Query on 5JV

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B
4-[(E)-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)amino]pent-4-enoic acid
C13 H17 N2 O7 P
HRCALJQKZAULQS-MKMNVTDBSA-N
 Ligand Interaction
PEG
Query on PEG

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A, B
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

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A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.168 
  • R-Value Observed: 0.171 
  • Space Group: P 1
  • Diffraction Data DOI: 10.18430/M35E5I Protein Diffraction
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.408α = 100.87
b = 61.445β = 92.48
c = 63.665γ = 108.12
Software Package:
Software NamePurpose
BLU-MAXdata collection
HKL-3000data collection
HKL-3000data scaling
PHASERphasing
REFMACrefinement
Cootmodel building
HKL-3000data reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-10-19
    Type: Initial release