5E5I

Structure of the ornithine aminotransferase from Toxoplasma gondii in complex with inactivator


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.168 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of the ornithine aminotransferase from Toxoplasma gondii in complex with inactivator.

Filippova, E.V.Minasov, G.Flores, K.Le, H.V.Silverman, R.B.McLeod, R.L.Anderson, W.F.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ornithine aminotransferase, mitochondrial
A, B
441Toxoplasma gondii (strain ATCC 50611 / Me49)Mutation(s): 0 
EC: 2.6.1.13
Find proteins for S8EY38 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Go to UniProtKB:  S8EY38
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
5JV
Query on 5JV

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Download CCD File 
B
4-[(E)-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)amino]pent-4-enoic acid
C13 H17 N2 O7 P
HRCALJQKZAULQS-MKMNVTDBSA-N
 Ligand Interaction
5NJ
Query on 5NJ

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Download CCD File 
A
6-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-4-oxidanylidene-hexanoic acid
C13 H18 N O8 P
QNTFLQLZXLXUGE-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

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Download CCD File 
A, B
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 56.408α = 100.87
b = 61.445β = 92.48
c = 63.665γ = 108.12
Software Package:
Software NamePurpose
REFMACrefinement
Cootmodel building
HKL-3000data reduction
BLU-MAXdata collection
HKL-3000data scaling
PHASERphasing
HKL-3000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-10-19
    Type: Initial release