5E0O | pdb_00005e0o

Brugia malayi Trehalose-6 Phosphate Phosphatase in complex with PEG at the active site.

• PDB DOI: https://doi.org/10.2210/pdb5E0O/pdb

• Classification: HYDROLASE
• Organism(s): Brugia malayi
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2015-09-29 Released: 2015-10-28 
• Deposition Author(s): Agarwal, A., Misra-Bhattacharya, S., Ravishankar, R.
• Funding Organization(s): Council of Scientific and Industrial Research

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 
  0.257 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.218 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.220 (Depositor) 

Starting Model: experimental

Literature

Brugia malayi Trehalose Phosphate Phosphatase in complex with PEG at the active site

Agarwal, A., Misra-Bhattacharya, S., Ravishankar, R.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 58.97 kDa 
• Atom Count: 3,351 
• Modeled Residue Count: 418 
• Deposited Residue Count: 526 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Trehalose-phosphatase	A	526	Brugia malayi	Mutation(s): 0  Gene Names: Bm1_08695 EC: 3.1.3.12
UniProt
Find proteins for A8NS89 (Brugia malayi) Explore A8NS89  Go to UniProtKB:  A8NS89

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PEG	D [auth A]	DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N
SO4	C [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
MG	B [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free:  0.257 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.218 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.220 (Depositor) 

Space Group: P 6₄ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 167.931	α = 90
b = 167.931	β = 90
c = 102.956	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2015-10-28 
Deposition Author(s): Agarwal, A., Misra-Bhattacharya, S., Ravishankar, R.

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Funding Organization	Location	Grant Number
Council of Scientific and Industrial Research	India	BSC0104

Revision History  

• Version 1.0: 2015-10-28
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.2: 2024-10-23
  Changes: Structure summary