5E0N

Crystal Structure of MSMEG_3139, a monofunctional enoyl CoA isomerase from M.smegmatis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.180 

wwPDB Validation 3D Report Full Report



Literature

Unsaturated Lipid Assimilation by Mycobacteria Requires Auxiliary cis-trans Enoyl CoA Isomerase.

Srivastava, S.Chaudhary, S.Thukral, L.Shi, C.Gupta, R.D.Gupta, R.Priyadarshan, K.Vats, A.Haque, A.S.Sankaranarayanan, R.Natarajan, V.T.Sharma, R.Aldrich, C.C.Gokhale, R.S.

(2015) Chem Biol 22: 1577-1587

  • DOI: 10.1016/j.chembiol.2015.10.009
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • Mycobacterium tuberculosis (Mtb) can survive in hypoxic necrotic tissue by assimilating energy from host-derived fatty acids. While the expanded repertoire of β-oxidation auxiliary enzymes is considered crucial for Mtb adaptability, delineating their ...

    Mycobacterium tuberculosis (Mtb) can survive in hypoxic necrotic tissue by assimilating energy from host-derived fatty acids. While the expanded repertoire of β-oxidation auxiliary enzymes is considered crucial for Mtb adaptability, delineating their functional relevance has been challenging. Here, we show that the Mtb fatty acid degradation (FadAB) complex cannot selectively break down cis fatty acyl substrates. We demonstrate that the stereoselective binding of fatty acyl substrates in the Mtb FadB pocket is due to the steric hindrance from Phe287 residue. By developing a functional screen, we classify the family of Mtb Ech proteins as monofunctional or bifunctional enzymes, three of which complement the FadAB complex to degrade cis fatty acids. Crystal structure determination of two cis-trans enoyl coenzyme A (CoA) isomerases reveals distinct placement of active-site residue in Ech enzymes. Our studies thus reveal versatility of Mtb lipid-remodeling enzymes and identify an essential role of stand-alone cis-trans enoyl CoA isomerases in mycobacterial biology.


    Organizational Affiliation

    CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi 110020, India; Academy of Scientific and Innovative Research, Rafi Marg, New Delhi 110001, India; National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi 110067, India. Electronic address: rsg@igib.res.in.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Enoyl-CoA hydratase/isomeraseX293Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
Gene Names: MSMEG_3139
Find proteins for A0QX16 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0QX16 
Go to UniProtKB:  A0QX16
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.180 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 102.601α = 90
b = 102.601β = 90
c = 145.951γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
Cootmodel building
MOLREPphasing
DENZOdata processing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-02-03
    Type: Initial release