5DWS

Crystal Structure of ITCH WW3 domain in complex with TXNIP peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.222 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of ITCH WW3 domain in complex with TXNIP peptide

Liu, Y.Tempel, W.Dong, A.Bountra, C.Arrowsmith, C.H.Edwards, A.M.Min, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
E3 ubiquitin-protein ligase Itchy homolog
A, C, E, G
47Homo sapiensMutation(s): 0 
Gene Names: ITCH
EC: 2.3.2.26
Find proteins for Q96J02 (Homo sapiens)
Go to Gene View: ITCH
Go to UniProtKB:  Q96J02
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
txnip
B, D, F, H
14Homo sapiensMutation(s): 0 
Gene Names: TXNIP (VDUP1)
Find proteins for Q9H3M7 (Homo sapiens)
Go to Gene View: TXNIP
Go to UniProtKB:  Q9H3M7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

Download SDF File 
Download CCD File 
A, C, E, F, G, H
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
NH2
Query on NH2
B, D, F, H
NON-POLYMERH2 N

--

ACE
Query on ACE
B, D, F, H
NON-POLYMERC2 H4 O

--

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.222 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 59.733α = 90.00
b = 30.142β = 109.20
c = 60.755γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
Aimlessdata scaling
DENZOdata reduction
REFMACrefinement
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-10-14
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Derived calculations, Refinement description