5DSZ | pdb_00005dsz

Gamma-subunit of the translation initiation factor 2 from S. solfataricus

PDB DOI: https://doi.org/10.2210/pdb5DSZ/pdb

Classification: TRANSLATION
Organism(s): Saccharolobus solfataricus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-09-17 Released: 2016-08-24
Deposition Author(s): Kravchenko, O.V., Nikonov, O.S., Stolboushkina, E.A., Nevskaya, N.A., Nikulin, A.D., Garber, M.B., Nikonov, S.V.
Funding Organization(s): The Russian Foundation for Basic Research

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.220 (Depositor), 0.222 (DCC)
R-Value Work:
0.201 (Depositor), 0.202 (DCC)
R-Value Observed:
0.202 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.5 of the entry. See complete history.

Literature

Gamma-subunit of the translation initiation factor 2 from S. solfataricus

Kravchenko, O.V., Nikonov, O.S., Stolboushkina, E.A., Nevskaya, N.A., Nikulin, A.D., Garber, M.B., Nikonov, S.V.

To be published.

Macromolecule Content

Total Structure Weight: 91.7 kDa
Atom Count: 6,467
Modeled Residue Count: 815
Deposited Residue Count: 830
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Translation initiation factor 2 subunit gamma	A, B	415	Saccharolobus solfataricus	Mutation(s): 0 Gene Names: eif2g, SSO0412 EC: 3.6.5.3
UniProt
Find proteins for Q980A5 (Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)) Explore Q980A5 Go to UniProtKB: Q980A5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q980A5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.220 (Depositor), 0.222 (DCC)
R-Value Work: 0.201 (Depositor), 0.202 (DCC)
R-Value Observed: 0.202 (Depositor)

Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 95.43	α = 90
b = 95.43	β = 90
c = 164.6	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2016-08-24

Deposition Author(s):

Kravchenko, O.V.

Stolboushkina, E.A.

Funding Organization	Location	Grant Number
The Russian Foundation for Basic Research	Russian Federation	14-04-00571 A

Revision History (Full details and data files)

Version 1.0: 2016-08-24
Type: Initial release
Version 1.1: 2019-02-20
Changes: Advisory, Data collection, Derived calculations
Version 1.2: 2019-07-10
Changes: Data collection
Version 1.3: 2019-07-17
Changes: Data collection
Version 1.4: 2024-01-10
Changes: Data collection, Database references, Refinement description
Version 1.5: 2024-11-13
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.