5DS2

Core domain of the class I small heat-shock protein HSP 18.1 from Pisum sativum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.205 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural principles that enable oligomeric small heat-shock protein paralogs to evolve distinct functions.

Hochberg, G.K.A.Shepherd, D.A.Marklund, E.G.Santhanagoplan, I.Degiacomi, M.T.Laganowsky, A.Allison, T.M.Basha, E.Marty, M.T.Galpin, M.R.Struwe, W.B.Baldwin, A.J.Vierling, E.Benesch, J.L.P.

(2018) Science 359: 930-935

  • DOI: 10.1126/science.aam7229
  • Primary Citation of Related Structures:  
    5DS1, 5DS2

  • PubMed Abstract: 
  • Oligomeric proteins assemble with exceptional selectivity, even in the presence of closely related proteins, to perform their cellular roles. We show that most proteins related by gene duplication of an oligomeric ancestor have evolved to avoid hetero-oligomerization and that this correlates with their acquisition of distinct functions ...

    Oligomeric proteins assemble with exceptional selectivity, even in the presence of closely related proteins, to perform their cellular roles. We show that most proteins related by gene duplication of an oligomeric ancestor have evolved to avoid hetero-oligomerization and that this correlates with their acquisition of distinct functions. We report how coassembly is avoided by two oligomeric small heat-shock protein paralogs. A hierarchy of assembly, involving intermediates that are populated only fleetingly at equilibrium, ensures selective oligomerization. Conformational flexibility at noninterfacial regions in the monomers prevents coassembly, allowing interfaces to remain largely conserved. Homomeric oligomers must overcome the entropic benefit of coassembly and, accordingly, homomeric paralogs comprise fewer subunits than homomers that have no paralogs.


    Organizational Affiliation

    Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QZ, UK. justin.benesch@chem.ox.ac.uk.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
18.1 kDa class I heat shock proteinA, B, C, D, E, F95Pisum sativumMutation(s): 0 
Gene Names: HSP18.1
UniProt
Find proteins for P19243 (Pisum sativum)
Explore P19243 
Go to UniProtKB:  P19243
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
G [auth A] , H [auth A] , I [auth B] , J [auth B] , K [auth C] , L [auth C] , M [auth C] , N [auth C] , 
G [auth A], H [auth A], I [auth B], J [auth B], K [auth C], L [auth C], M [auth C], N [auth C], O [auth D], P [auth E], Q [auth E], R [auth E], S [auth E], T [auth F], U [auth F], V [auth F], W [auth F]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.205 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 89.06α = 90
b = 89.06β = 90
c = 142.9γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-09-28
    Type: Initial release
  • Version 1.1: 2020-03-04
    Changes: Database references