5DRX

Crystal structure of the BCR Fab fragment from subset #4 case CLL240


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.195 

wwPDB Validation 3D Report Full Report



Literature

Structural basis of autologous recognition by a clonotypic B cell receptor in chronic lymphocytic leukemia

Minici, C.Gounari, M.Duehren-von Minden, M.Schneider, D.Alkhatib, A.Uebelhart, R.Agathangelidis, A.Ntoufa, S.Chiorazzi, N.Jumaa, H.Stamatopoulos, K.Ghia, P.Degano, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CLL240 heavy chain (VH and CH1 domains)A, H228Homo sapiensMutation(s): 0 
Gene Names: IGHV4-34IGHJ6IGHG1*03
Protein Feature View
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  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
CLL240 BCR light chainB, L221Homo sapiensMutation(s): 0 
Gene Names: IGKV2-30IGKJ2IGKC*01
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download CCD File 
A, B, H, L
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.195 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 86.187α = 90
b = 92.327β = 90
c = 135.13γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing
Cootmodel building

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2015-09-16 
  • Released Date: 2016-09-28 
  • Deposition Author(s): Minici, C., Degano, M.

Funding OrganizationLocationGrant Number
AIRCItaly5xMille
Fondazione Intesa San Paolo OnlusItaly--

Revision History 

  • Version 1.0: 2016-09-28
    Type: Initial release