5DRX

Crystal structure of the BCR Fab fragment from subset #4 case CLL240


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.104 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis of autologous recognition by a clonotypic B cell receptor in chronic lymphocytic leukemia

Minici, C.Gounari, M.Duehren-von Minden, M.Schneider, D.Alkhatib, A.Uebelhart, R.Agathangelidis, A.Ntoufa, S.Chiorazzi, N.Jumaa, H.Stamatopoulos, K.Ghia, P.Degano, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CLL240 heavy chain (VH and CH1 domains)
H, A
228N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
CLL240 BCR light chain
L, B
221N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B, H, L
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.104 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.194 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 86.187α = 90.00
b = 92.327β = 90.00
c = 135.130γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
XDSdata reduction
Cootmodel building
PHENIXrefinement
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2015-09-16 
  • Released Date: 2016-09-28 
  • Deposition Author(s): Minici, C., Degano, M.

Funding OrganizationCountryGrant Number
AIRCItaly5xMille
Fondazione Intesa San Paolo OnlusItaly--

Revision History 

  • Version 1.0: 2016-09-28
    Type: Initial release