5DQS | pdb_00005dqs

Complex structure of human elongation factor 1B alpha and gamma GST-like domains

• PDB DOI: https://doi.org/10.2210/pdb5DQS/pdb

• Classification: TRANSLATION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2015-09-15 Released: 2016-09-21 
• Deposition Author(s): Choi, Y.S., Cho, H.Y., Kang, B.S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.242 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.204 (Depositor), 0.240 (DCC) 
• R-Value Observed: 
  0.208 (Depositor) 

Literature

Complex structure of human elongation factor 1B alpha and gamma GST-like domains

Choi, Y.S., Cho, H.Y., Kang, B.S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 34.54 kDa 
• Atom Count: 2,330 
• Modeled Residue Count: 297 
• Deposited Residue Count: 310 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Elongation factor 1-gamma	A	220	Homo sapiens	Mutation(s): 0  Gene Names: EEF1G, EF1G, PRO1608
UniProt & NIH Common Fund Data Resources
Find proteins for P26641 (Homo sapiens) Explore P26641  Go to UniProtKB:  P26641
GTEx:  ENSG00000254772

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Elongation factor 1-beta	B [auth D]	90	Homo sapiens	Mutation(s): 0  Gene Names: EEF1B2, EEF1B, EF1B
UniProt & NIH Common Fund Data Resources
Find proteins for P24534 (Homo sapiens) Explore P24534  Go to UniProtKB:  P24534
PHAROS:  P24534 GTEx:  ENSG00000114942

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.242 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.204 (Depositor), 0.240 (DCC) 
• R-Value Observed: 0.208 (Depositor) 

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.788	α = 90
b = 50.788	β = 90
c = 187.439	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-09-21 
Deposition Author(s): Choi, Y.S., Cho, H.Y., Kang, B.S.

Revision History  

• Version 1.0: 2016-09-21
  Type: Initial release
  
• Version 1.1: 2024-10-16
  Changes: Data collection, Database references, Derived calculations, Structure summary