5DQ6 | pdb_00005dq6

Mus musculus A20 OTU domain

• PDB DOI: https://doi.org/10.2210/pdb5DQ6/pdb

• Classification: HYDROLASE
• Organism(s): Mus musculus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-09-14 Released: 2015-12-30 
• Deposition Author(s): Mabbitt, P.D., Jackson, C.J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free: 
  0.290 (Depositor), 0.300 (DCC) 
• R-Value Work: 
  0.253 (Depositor), 0.260 (DCC) 
• R-Value Observed: 
  0.256 (Depositor) 

Starting Model: experimental

Literature

Mus musculus A20 OTU domain

Mabbitt, P.D., Jackson, C.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 84.28 kDa 
• Atom Count: 5,537 
• Modeled Residue Count: 666 
• Deposited Residue Count: 720 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tumor necrosis factor alpha-induced protein 3	A, B	360	Mus musculus	Mutation(s): 0  Gene Names: Tnfaip3, Tnfip3 EC: 3.4.19.12 (PDB Primary Data), 6.3.2 (PDB Primary Data), 2.3.2 (UniProt)
UniProt
Find proteins for Q60769 (Mus musculus) Explore Q60769  Go to UniProtKB:  Q60769

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free:  0.290 (Depositor), 0.300 (DCC) 
• R-Value Work:  0.253 (Depositor), 0.260 (DCC) 
• R-Value Observed: 0.256 (Depositor) 

Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.34	α = 90
b = 71.34	β = 90
c = 143.181	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
SCALA	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-12-30 
Deposition Author(s): Mabbitt, P.D., Jackson, C.J.

Revision History  

• Version 1.0: 2015-12-30
  Type: Initial release
  
• Version 1.1: 2023-09-27
  Changes: Data collection, Database references, Derived calculations, Refinement description