5DO7 | pdb_00005do7

Crystal Structure of the Human Sterol Transporter ABCG5/ABCG8


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.93 Å
  • R-Value Free: 
    0.329 (Depositor), 0.327 (DCC) 
  • R-Value Work: 
    0.245 (Depositor), 0.250 (DCC) 
  • R-Value Observed: 
    0.250 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.5 of the entry. See complete history

Literature

Crystal structure of the human sterol transporter ABCG5/ABCG8.

Lee, J.Y.Kinch, L.N.Borek, D.M.Wang, J.Wang, J.Urbatsch, I.L.Xie, X.S.Grishin, N.V.Cohen, J.C.Otwinowski, Z.Hobbs, H.H.Rosenbaum, D.M.

(2016) Nature 533: 561-564

  • DOI: https://doi.org/10.1038/nature17666
  • Primary Citation Related Structures: 
    5DO7

  • PubMed Abstract: 

    ATP binding cassette (ABC) transporters play critical roles in maintaining sterol balance in higher eukaryotes. The ABCG5/ABCG8 heterodimer (G5G8) mediates excretion of neutral sterols in liver and intestines. Mutations disrupting G5G8 cause sitosterolaemia, a disorder characterized by sterol accumulation and premature atherosclerosis. Here we use crystallization in lipid bilayers to determine the X-ray structure of human G5G8 in a nucleotide-free state at 3.9 Å resolution, generating the first atomic model of an ABC sterol transporter. The structure reveals a new transmembrane fold that is present in a large and functionally diverse superfamily of ABC transporters. The transmembrane domains are coupled to the nucleotide-binding sites by networks of interactions that differ between the active and inactive ATPases, reflecting the catalytic asymmetry of the transporter. The G5G8 structure provides a mechanistic framework for understanding sterol transport and the disruptive effects of mutations causing sitosterolaemia.


  • Organizational Affiliation
    • Eugene McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390, USA.

Macromolecule Content 

  • Total Structure Weight: 302.99 kDa 
  • Atom Count: 18,150 
  • Modeled Residue Count: 2,297 
  • Deposited Residue Count: 2,702 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ATP-binding cassette sub-family G member 5A,
D [auth C]
666Homo sapiensMutation(s): 1 
Gene Names: ABCG5
EC: 7.6.2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H222 (Homo sapiens)
Explore Q9H222 
Go to UniProtKB:  Q9H222
PHAROS:  Q9H222
GTEx:  ENSG00000138075 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H222
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
ATP-binding cassette sub-family G member 8B,
C [auth D]
685Homo sapiensMutation(s): 0 
Gene Names: ABCG8
EC: 7.6.2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H221 (Homo sapiens)
Explore Q9H221 
Go to UniProtKB:  Q9H221
PHAROS:  Q9H221
GTEx:  ENSG00000143921 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H221
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.93 Å
  • R-Value Free:  0.329 (Depositor), 0.327 (DCC) 
  • R-Value Work:  0.245 (Depositor), 0.250 (DCC) 
  • R-Value Observed: 0.250 (Depositor) 
Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 173.552α = 90
b = 224.804β = 90
c = 253.304γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
MLPHAREphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesHL72304
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesP01-HL20948
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM113050
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM053163
American Heart AssociationUnited States0825285F
American Heart AssociationUnited States0463130Y

Revision History  (Full details and data files)

  • Version 1.0: 2016-05-11
    Type: Initial release
  • Version 1.1: 2016-05-25
    Changes: Database references
  • Version 1.2: 2016-06-08
    Changes: Database references
  • Version 1.3: 2017-09-27
    Changes: Author supporting evidence, Database references, Derived calculations
  • Version 1.4: 2019-12-04
    Changes: Author supporting evidence
  • Version 1.5: 2024-03-06
    Changes: Data collection, Database references, Refinement description