5DN7 | pdb_00005dn7

Crescerin uses a TOG domain array to regulate microtubules in the primary cilium


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 
    0.239 (Depositor), 0.237 (DCC) 
  • R-Value Work: 
    0.183 (Depositor), 0.184 (DCC) 
  • R-Value Observed: 
    0.188 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 5DN7

This is version 1.5 of the entry. See complete history

Literature

Crescerin uses a TOG domain array to regulate microtubules in the primary cilium.

Das, A.Dickinson, D.J.Wood, C.C.Goldstein, B.Slep, K.C.

(2015) Mol Biol Cell 26: 4248-4264

  • DOI: https://doi.org/10.1091/mbc.E15-08-0603
  • Primary Citation Related Structures: 
    5DN7

  • PubMed Abstract: 

    Eukaryotic cilia are cell-surface projections critical for sensing the extracellular environment. Defects in cilia structure and function result in a broad range of developmental and sensory disorders. However, mechanisms that regulate the microtubule (MT)-based scaffold forming the cilia core are poorly understood. TOG domain array-containing proteins ch-TOG and CLASP are key regulators of cytoplasmic MTs. Whether TOG array proteins also regulate ciliary MTs is unknown. Here we identify the conserved Crescerin protein family as a cilia-specific, TOG array-containing MT regulator. We present the crystal structure of mammalian Crescerin1 TOG2, revealing a canonical TOG fold with conserved tubulin-binding determinants. Crescerin1's TOG domains possess inherent MT-binding activity and promote MT polymerization in vitro. Using Cas9-triggered homologous recombination in Caenorhabditis elegans, we demonstrate that the worm Crescerin family member CHE-12 requires TOG domain-dependent tubulin-binding activity for sensory cilia development. Thus, Crescerin expands the TOG domain array-based MT regulatory paradigm beyond ch-TOG and CLASP, representing a distinct regulator of cilia structure.


  • Organizational Affiliation
    • Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599 Molecular and Cellular Biophysics Program, University of North Carolina, Chapel Hill, NC 27599.

Macromolecule Content 

  • Total Structure Weight: 32.5 kDa 
  • Atom Count: 1,985 
  • Modeled Residue Count: 240 
  • Deposited Residue Count: 293 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein FAM179B293Mus musculusMutation(s): 0 
Gene Names: Fam179bKiaa0423
UniProt & NIH Common Fund Data Resources
Find proteins for Q6A070 (Mus musculus)
Explore Q6A070 
Go to UniProtKB:  Q6A070
IMPC:  MGI:2684313
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6A070
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free:  0.239 (Depositor), 0.237 (DCC) 
  • R-Value Work:  0.183 (Depositor), 0.184 (DCC) 
  • R-Value Observed: 0.188 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 72.389α = 90
b = 48.454β = 90
c = 68.016γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction
PHASERphasing
Cootmodel building
SERGUIdata collection

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM094415
March of DimesUnited StatesFY14-247

Revision History  (Full details and data files)

  • Version 1.0: 2015-09-23
    Type: Initial release
  • Version 1.1: 2015-09-30
    Changes: Database references
  • Version 1.2: 2015-11-25
    Changes: Database references
  • Version 1.3: 2017-09-13
    Changes: Author supporting evidence, Derived calculations
  • Version 1.4: 2019-12-25
    Changes: Author supporting evidence
  • Version 1.5: 2024-03-06
    Changes: Data collection, Database references