5DLH

SFX structure of thermolysin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2501 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.179 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Serial Femtosecond Crystallography of Ribosome-Antibiotic and Photosystem II Complexes at Ambient Temperature using a Concentric Electrospinning Injector.

DeMirci, H.D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thermolysin
A
316Geobacillus stearothermophilusMutation(s): 0 
Gene Names: nprS (nprM)
EC: 3.4.24.27
Find proteins for P43133 (Geobacillus stearothermophilus)
Go to UniProtKB:  P43133
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2501 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.179 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 93.794α = 90.00
b = 93.794β = 90.00
c = 132.243γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
cctbx.xfeldata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Energy (United States)United StatesDE-AC02-05CH11231
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM055302
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM102520
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM095887

Revision History 

  • Version 1.0: 2015-11-18
    Type: Initial release
  • Version 1.1: 2017-09-06
    Type: Author supporting evidence, Derived calculations
  • Version 1.2: 2018-02-14
    Type: Data collection
  • Version 1.3: 2018-09-19
    Type: Data collection