5DKD

Crystal structure of the bromodomain of human BRG1 (SMARCA4) in complex with PFI-3 chemical probe


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.268 
  • R-Value Observed: 0.269 

wwPDB Validation 3D Report Full Report



Literature

Crystal structure of the bromodomain of human BRG1 (SMARCA4) in complex with PFI-3 chemical probe

Tallant, C.Owen, D.R.Gerstenberger, B.S.Fedorov, O.Savitsky, P.Nunez-Alonso, G.Newman, J.A.Filippakopoulos, P.Burgess-Brown, N.von Delft, F.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Muller, S.Knapp, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Transcription activator BRG1
A, B
121Homo sapiensMutation(s): 0 
Gene Names: SMARCA4BAF190ABRG1SNF2BSNF2L4
EC: 3.6.4
Find proteins for P51532 (Homo sapiens)
Go to UniProtKB:  P51532
NIH Common Fund Data Resources
PHAROS  P51532
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
5BW
Query on 5BW

Download CCD File 
A, B
(2E)-1-(2-hydroxyphenyl)-3-[(1R,4R)-5-(pyridin-2-yl)-2,5-diazabicyclo[2.2.1]hept-2-yl]prop-2-en-1-one
C19 H19 N3 O2
INAICWLVUAKEPB-QSTFCLMHSA-N
 Ligand Interaction
ZN
Query on ZN

Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download CCD File 
A, B
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
5BWKd:  89   nM  BindingDB
5BWKd:  100   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.268 
  • R-Value Observed: 0.269 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 45.926α = 90
b = 74.566β = 109.9
c = 52.626γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Revision History 

  • Version 1.0: 2015-10-14
    Type: Initial release