5DKD

Crystal structure of the bromodomain of human BRG1 (SMARCA4) in complex with PFI-3 chemical probe


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.268 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the bromodomain of human BRG1 (SMARCA4) in complex with PFI-3 chemical probe

Tallant, C.Owen, D.R.Gerstenberger, B.S.Fedorov, O.Savitsky, P.Nunez-Alonso, G.Newman, J.A.Filippakopoulos, P.Burgess-Brown, N.von Delft, F.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Muller, S.Knapp, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Transcription activator BRG1
A, B
121Homo sapiensMutation(s): 0 
Gene Names: SMARCA4 (BAF190A, BRG1, SNF2B, SNF2L4)
EC: 3.6.4.-
Find proteins for P51532 (Homo sapiens)
Go to Gene View: SMARCA4
Go to UniProtKB:  P51532
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
5BW
Query on 5BW

Download SDF File 
Download CCD File 
A, B
(2E)-1-(2-hydroxyphenyl)-3-[(1R,4R)-5-(pyridin-2-yl)-2,5-diazabicyclo[2.2.1]hept-2-yl]prop-2-en-1-one
C19 H19 N3 O2
INAICWLVUAKEPB-QSTFCLMHSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
5BWKd: 89 - <100 nM (100) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.268 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 45.926α = 90.00
b = 74.566β = 109.90
c = 52.626γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
Aimlessdata scaling
XDSdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2015-10-14
    Type: Initial release