5DIO | pdb_00005dio

Crystal structure of unnamed thioesterase lpg2867 from Legionella pneumophila, the D21A mutant

• PDB DOI: https://doi.org/10.2210/pdb5DIO/pdb

• Classification: HYDROLASE
• Organism(s): Legionella pneumophila
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2015-09-01 Released: 2016-10-05 
• Deposition Author(s): Swarbrick, C.M.D., Forwood, J.K.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 
  0.286 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.249 (Depositor), 0.260 (DCC) 
• R-Value Observed: 
  0.251 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of unnamed thioesterase lpg2867 from Legionella pneumophila, the D21A mutant

Swarbrick, C.M.D., Forwood, J.K.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 30.28 kDa 
• Atom Count: 1,911 
• Modeled Residue Count: 239 
• Deposited Residue Count: 266 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioesterase	A, B	133	Legionella pneumophila	Mutation(s): 1  Gene Names: lp12_2856
UniProt
Find proteins for Q5ZRL4 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZRL4  Go to UniProtKB:  Q5ZRL4

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free:  0.286 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.249 (Depositor), 0.260 (DCC) 
• R-Value Observed: 0.251 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.88	α = 90
b = 115.741	β = 115.05
c = 58.35	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
Blu-Ice	data collection
PHASER	phasing
iMOSFLM	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-10-05 
Deposition Author(s): Swarbrick, C.M.D., Forwood, J.K.

Revision History  

• Version 1.0: 2016-10-05
  Type: Initial release
  
• Version 1.1: 2023-09-27
  Changes: Data collection, Database references, Derived calculations, Refinement description