5DIO | pdb_00005dio

Crystal structure of unnamed thioesterase lpg2867 from Legionella pneumophila, the D21A mutant

PDB DOI: https://doi.org/10.2210/pdb5DIO/pdb

Classification: HYDROLASE
Organism(s): Legionella pneumophila
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2015-09-01 Released: 2016-10-05
Deposition Author(s): Swarbrick, C.M.D., Forwood, J.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.286 (Depositor), 0.280 (DCC)
R-Value Work:
0.249 (Depositor), 0.255 (DCC)
R-Value Observed:
0.251 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of unnamed thioesterase lpg2867 from Legionella pneumophila, the D21A mutant

Swarbrick, C.M.D., Forwood, J.K.

To be published.

Macromolecule Content

Total Structure Weight: 30.28 kDa
Atom Count: 1,911
Modeled Residue Count: 239
Deposited Residue Count: 266
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioesterase	A, B	133	Legionella pneumophila	Mutation(s): 1 Gene Names: lp12_2856
UniProt
Find proteins for Q5ZRL4 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZRL4 Go to UniProtKB: Q5ZRL4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5ZRL4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.286 (Depositor), 0.280 (DCC)
R-Value Work: 0.249 (Depositor), 0.255 (DCC)
R-Value Observed: 0.251 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.88	α = 90
b = 115.741	β = 115.05
c = 58.35	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
Blu-Ice	data collection
PHASER	phasing
iMOSFLM	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-10-05

Deposition Author(s):

Swarbrick, C.M.D.

Revision History (Full details and data files)

Version 1.0: 2016-10-05
Type: Initial release
Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.