5DF5

The structure of oxidized rat cytochrome c (T28E) at 1.30 angstroms resolution.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.301 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.148 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The structure of oxidized rat cytochrome c (T28E) at 1.30 angstroms resolution.

Edwards, B.F.P.Mahapatra, G.Vaishnav, A.A.Brunzelle, J.S.Huttemann, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cytochrome c, somatic
A, B, C, D
104Rattus norvegicusMutation(s): 0 
Gene Names: Cycs
Find proteins for P62898 (Rattus norvegicus)
Go to UniProtKB:  P62898
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FC6
Query on FC6

Download SDF File 
Download CCD File 
B, C
HEXACYANOFERRATE(3-)
FERRI(III)HEXACYANIDE
C6 Fe N6
HCMVSLMENOCDCK-UHFFFAOYSA-N
 Ligand Interaction
HEC
Query on HEC

Download SDF File 
Download CCD File 
A, B, C, D
HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.301 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.148 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 34.609α = 110.01
b = 51.739β = 93.09
c = 61.748γ = 91.88
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
PHENIXphasing
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of HealthUnited StatesNIGMS RO1 089900

Revision History 

  • Version 1.0: 2016-09-14
    Type: Initial release
  • Version 1.1: 2018-01-31
    Type: Author supporting evidence