5DA6

Atomic resolution crystal structure of double-stranded RNA 32 base pairs long determined from random starting phases angles in the presence of pseudo translational symmetry using the direct methods program SIR2014.

  • Classification: RNA
  • Organism(s): Trypanosoma brucei

  • Deposited: 2015-08-19 Released: 2016-04-13 
  • Deposition Author(s): Mooers, B.H.M.
  • Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases; National Institutes of Health/National Institute of General Medical Sciences 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.157 
  • R-Value Work: 0.129 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Direct-methods structure determination of a trypanosome RNA-editing substrate fragment with translational pseudosymmetry

Mooers, B.H.M.

(2016) Acta Crystallogr.,Sect.D 72: 477


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
RNA (32-MER)A32Trypanosoma brucei
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.157 
  • R-Value Work: 0.129 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 42.890α = 90.00
b = 42.890β = 90.00
c = 266.936γ = 120.00
Software Package:
Software NamePurpose
Blu-Icedata collection
PHENIXrefinement
iMOSFLMdata reduction
Sir2014phasing
SCALAdata scaling
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2015-08-19 
  • Released Date: 2016-04-13 
  • Deposition Author(s): Mooers, B.H.M.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesR01 AI088011
National Institutes of Health/National Institute of General Medical SciencesUnited StatesP20 GM103640

Revision History 

  • Version 1.0: 2016-04-13
    Type: Initial release
  • Version 1.1: 2017-09-27
    Type: Author supporting evidence, Derived calculations