5DA1 | pdb_00005da1

A Dimerization-Dependent Mechanism Drives PRRSV NSP11 Functions As a Beta Interferon Antagonist and Endoribonuclease

PDB DOI: https://doi.org/10.2210/pdb5DA1/pdb

Classification: HYDROLASE
Organism(s): Porcine reproductive and respiratory syndrome virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-08-19 Released: 2016-03-09
Deposition Author(s): Shi, Y., Peng, G.
Funding Organization(s): Major State Basic Research Development Program

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free:
0.282 (Depositor), 0.290 (DCC)
R-Value Work:
0.211 (Depositor), 0.230 (DCC)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

A Dimerization-Dependent Mechanism Drives PRRSV NSP11 Functions As a Beta Interferon Antagonist and Endoribonuclease

Shi, Y., Peng, G.

To be published.

Macromolecule Content

Total Structure Weight: 51.44 kDa
Atom Count: 3,400
Modeled Residue Count: 427
Deposited Residue Count: 458
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
endoribonuclease	A, B	229	Porcine reproductive and respiratory syndrome virus	Mutation(s): 0
UniProt
Find proteins for E3V2B6 (Porcine reproductive and respiratory syndrome virus) Explore E3V2B6 Go to UniProtKB: E3V2B6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	E3V2B6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free: 0.282 (Depositor), 0.290 (DCC)
R-Value Work: 0.211 (Depositor), 0.230 (DCC)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.317	α = 90
b = 77.317	β = 90
c = 204.693	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2016-03-09

Deposition Author(s):

Funding Organization	Location	Grant Number
Major State Basic Research Development Program	China	2014CB542700

Revision History (Full details and data files)

Version 1.0: 2016-03-09
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references, Derived calculations

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.