5D7Y

Crystal structure of Hepatitis B virus T=4 capsid in complex with the allosteric modulator HAP18


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.894 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.263 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Hepatitis B Virus Capsids Have Diverse Structural Responses to Small-Molecule Ligands Bound to the Heteroaryldihydropyrimidine Pocket.

Venkatakrishnan, B.Katen, S.P.Francis, S.Chirapu, S.Finn, M.G.Zlotnick, A.

(2016) J.Virol. 90: 3994-4004


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Capsid protein
A, B, C, D
150Hepatitis B virus genotype D subtype adw (isolate United Kingdom/adyw/1979)Mutation(s): 4 
Gene Names: C
Find proteins for P03147 (Hepatitis B virus genotype D subtype adw (isolate United Kingdom/adyw/1979))
Go to UniProtKB:  P03147
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
58H
Query on 58H

Download SDF File 
Download CCD File 
B, C
methyl (4R)-4-(2-chloro-4-fluorophenyl)-6-{[4-(3-hydroxypenta-1,4-diyn-3-yl)piperidin-1-yl]methyl}-2-(pyridin-2-yl)-1,4-dihydropyrimidine-5-carboxylate
C28 H26 Cl F N4 O3
GKZRJYVILONFJM-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.894 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.263 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 529.375α = 90.00
b = 367.411β = 104.79
c = 542.002γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PHENIXrefinement
PHENIXphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of HealthUnited States--

Revision History 

  • Version 1.0: 2016-02-17
    Type: Initial release
  • Version 1.1: 2016-04-13
    Type: Database references