5D76

The crystal structure of Ly7917 with the hydrolyzing product of MDP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.54 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.210 

wwPDB Validation 3D Report Full Report



Literature

The crystal structure of Ly7917

Wu, L.Ji, W.H.Sun, J.H.Zhou, J.H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Putative phage lysinAB273Streptococcus phage phi7917Mutation(s): 0 
Gene Names: phi7917_002
Find proteins for M1PKZ3 (Streptococcus phage phi7917)
Explore M1PKZ3 
Go to UniProtKB:  M1PKZ3
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
58B
Query on 58B

Download CCD File 
A, B
L-alanyl-D-alpha-glutamine
C8 H15 N3 O4
NKUHWWPUOXOIIR-CRCLSJGQSA-N
 Ligand Interaction
CL
Query on CL

Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.54 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.210 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 69.856α = 90
b = 97.139β = 90
c = 174.519γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-08-17
    Type: Initial release