5D2L

Crystal structure of TCR C7 in complex with HCMV NLV epitope presented by HLA-A2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.511 Å
  • R-Value Free: 0.355 
  • R-Value Work: 0.270 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of TCR C7 in complex with HCMV NLV epitope presented by HLA-A2

Yang, X.Gao, M.Chen, G.Pierce, B.G.Lu, G.Weng, N.-P.Mariuzza, R.A.

(2015) J.Biol.Chem. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HLA class I histocompatibility antigen, A-2 alpha chain
A, G, M, C
276Homo sapiensMutation(s): 0 
Gene Names: HLA-A (HLAA)
Find proteins for P01892 (Homo sapiens)
Go to Gene View: HLA-A
Go to UniProtKB:  P01892
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B, H, N, D
100Homo sapiensMutation(s): 0 
Gene Names: B2M
Find proteins for P61769 (Homo sapiens)
Go to Gene View: B2M
Go to UniProtKB:  P61769
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
C7 TCR alpha chain
I, K, O, E
205N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
C7 TCR beta chain
J, L, P, F
245N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
ASN-LEU-VAL-PRO-MET-VAL-ALA-THR-VAL
Q, U, T, R
9Human cytomegalovirus (strain Towne)Mutation(s): 0 
Gene Names: UL83
Find proteins for P18139 (Human cytomegalovirus (strain Towne))
Go to UniProtKB:  P18139
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.511 Å
  • R-Value Free: 0.355 
  • R-Value Work: 0.270 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 151.760α = 90.00
b = 366.643β = 90.00
c = 151.948γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
Cootmodel building
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI036900

Revision History 

  • Version 1.0: 2015-10-07
    Type: Initial release
  • Version 1.1: 2017-08-23
    Type: Data collection, Database references, Derived calculations
  • Version 1.2: 2017-09-27
    Type: Author supporting evidence